# Vignettes and other documentation

## Vignettes from package 'transitiontrees'

transitiontrees::advanced-analysis |  | 4. Advanced analysis: smoothing, tuning, comparison, and mining | HTML | source | R code
transitiontrees::analysis-case |  | 2. A complete analysis case: collaborative-regulation sequences | HTML | source | R code
transitiontrees::ecosystem-compatibility |  | 3. Ecosystem compatibility: TraMineR, tna, and Nestimate | HTML | source | R code
transitiontrees::getting-started |  | 1. Getting started: basic analysis and trajectory trees | HTML | source | R code
transitiontrees::visualization |  | 5. Visualization: every plot, and how to read it | HTML | source | R code