Last updated on 2026-06-18 01:52:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 6.39 | 52.86 | 59.25 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 4.49 | 38.62 | 43.11 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 11.00 | 80.02 | 91.02 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 10.00 | 75.49 | 85.49 | OK | |
| r-devel-windows-x86_64 | 2.0.1 | 10.00 | 73.00 | 83.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1 | 5.96 | 47.78 | 53.74 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 5.82 | 47.88 | 53.70 | OK | |
| r-release-macos-arm64 | 2.0.1 | 2.00 | 16.00 | 18.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 5.00 | 151.00 | 156.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 7.00 | 74.00 | 81.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 1.00 | 20.00 | 21.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.1 | 5.00 | 108.00 | 113.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 11.00 | 86.00 | 97.00 | OK |
Version: 2.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/34s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Sending GraphQL request...
Saving _problems/test_gwasCredibleSetsQuery-14.R
x Sending GraphQL request... [30.7s]
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test_GWASColocQuery.R:2:3', 'test_adverseEventsQuery.R:2:3',
'test_chemblQuery.R:2:3', 'test_clinVarQuery.R:2:3',
'test_compGenomicsQuery.R:2:3', 'test_depMapQuery.R:2:3',
'test_europePMCQuery.R:2:3', 'test_geneBurdenQuery.R:2:3',
'test_geneOntologyQuery.R:2:3', 'test_geneticConstraintQuery.R:2:3',
'test_genomicsEnglandQuery.R:2:3', 'test_hallmarksQuery.R:2:3',
'test_interactionsQuery.R:2:3', 'test_knownDrugsChemblQuery.R:2:3',
'test_knownDrugsGeneQuery.R:2:3', 'test_mechanismsOfActionQuery.R:2:3',
'test_mousePhenotypesQuery.R:2:3', 'test_orphanetQuery.R:2:3',
'test_pathwaysQuery.R:2:3', 'test_pharmacogenomicsChemblQuery.R:2:3',
'test_pharmacogenomicsGeneQuery.R:2:3',
'test_pharmacogenomicsVariantQuery.R:2:3', 'test_qtlCredibleSetsQuery.R:2:3',
'test_safetyQuery.R:2:3', 'test_sharedTraitStudiesQuery.R:2:3',
'test_uniProtVariantsQuery.R:2:3', 'test_uniprotLiteratureQuery.R:2:3',
'test_variantEffectPredictorQuery.R:2:3', 'test_variantEffectQuery.R:2:3',
'test_variantsQuery.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gwasCredibleSetsQuery.R:10:3'): gwasCredibleSetsQuery returns expected results ──
Error in `gwasCredibleSetsQuery(ensemblId = ensemblId, efoId = efoId, size = size)`: GraphQL query failed. HTTP status: 502
Backtrace:
▆
1. └─otargen::gwasCredibleSetsQuery(...) at test_gwasCredibleSetsQuery.R:10:3
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc