glyparse: Parsing Glycan Structure Text Representations

Provides functions to parse glycan structure text representations into 'glyrepr' glycan structures. Currently, it supports StrucGP-style, pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact, WURCS, LINUCS, Linear Code, GlycoCT, and KCF format. It also provides an automatic parser to detect the format and parse the structure string.

Version: 0.7.0
Depends: R (≥ 4.1)
Imports: checkmate, cli, dplyr, glyrepr (≥ 0.12.0), igraph, purrr (≥ 1.0.0), rlang, rstackdeque, stringr, vctrs
Suggests: knitr, rmarkdown, glue, testthat (≥ 3.0.0)
Published: 2026-07-06
DOI: 10.32614/CRAN.package.glyparse
Author: Bin Fu ORCID iD [aut, cre, cph]
Maintainer: Bin Fu <23110220018 at m.fudan.edu.cn>
BugReports: https://github.com/glycoverse/glyparse/issues
License: MIT + file LICENSE
URL: https://glycoverse.github.io/glyparse/, https://github.com/glycoverse/glyparse
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: glyparse results

Documentation:

Reference manual: glyparse.html , glyparse.pdf
Vignettes: Getting Started with glyparse (source, R code)

Downloads:

Package source: glyparse_0.7.0.tar.gz
Windows binaries: r-devel: glyparse_0.6.1.zip, r-release: glyparse_0.7.0.zip, r-oldrel: glyparse_0.6.1.zip
macOS binaries: r-release (arm64): glyparse_0.7.0.tgz, r-oldrel (arm64): glyparse_0.7.0.tgz, r-release (x86_64): glyparse_0.7.0.tgz, r-oldrel (x86_64): glyparse_0.7.0.tgz
Old sources: glyparse archive

Linking:

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