%% \VignetteIndexEntry{Examples for the orgutils package}
\documentclass[a4paper,11pt]{article}
\usepackage[left = 3cm, top = 2cm, bottom = 2cm, right = 4cm]{geometry}
\usepackage[noae,nogin]{Sweave}
\usepackage{libertine}
\usepackage[scaled=0.9]{inconsolata}
% \usepackage[T1]{fontenc}
\renewcommand*\familydefault{\sfdefault}
\usepackage{amsmath,amstext}
\usepackage{hyperref}
\usepackage{natbib}
\usepackage{xcolor}
\usepackage{framed}
\usepackage{fancyvrb}
\definecolor{grau2}{rgb}{.2,.2,.2}
\definecolor{grau7}{rgb}{.7,.7,.7}
\DefineVerbatimEnvironment{Sinput}{Verbatim}{}
\DefineVerbatimEnvironment{Soutput}{Verbatim}{frame=single,xleftmargin=0em,%
  formatcom=\color{grau2},rulecolor=\color{grau7}}
\DefineVerbatimEnvironment{Scode}{Verbatim}{xleftmargin=2em}
\fvset{listparameters={\setlength{\topsep}{0pt}}}
\renewenvironment{Schunk}{\vspace{\topsep}}{\vspace{\topsep}}
\SweaveOpts{keep.source = TRUE, eps = TRUE}

<<echo=false>>=
options(continue = "  ", digits = 3, width = 60, useFancyQuotes = FALSE)
@

\begin{document}
\title{Examples for the \texttt{orgutils} package}
\author{Enrico Schumann\\\url{mailto:es@enricoschumann.net}}

{\raggedright{\LARGE Examples for the \texttt{orgutils} package}}\medskip

\noindent Enrico Schumann\\
\noindent \url{mailto:es@enricoschumann.net}\\
\bigskip

\section{\texttt{toOrg}}

\texttt{toOrg} is a generic function in the spirit of
\texttt{toLatex}: it transforms R objects into Org snippets. This is
most useful for data frames:
<<>>=
df <- data.frame(numbers = 1:5, row.names = LETTERS[1:5])
df
@

\noindent And transformed into Org markup:
<<>>=
require("orgutils")
toOrg(df)
@

\noindent Since Org tables are very human-readable, such a display is
also useful for plain-text emails or reports.

There are also \texttt{toOrg} methods for dates (class \texttt{Date})
and times (classes \texttt{POSIXct} and \texttt{POSIXlt}).
<<>>=
toOrg(Sys.Date())
toOrg(Sys.time())
toOrg(Sys.time(), inactive = TRUE)
@


\newpage

\section{\texttt{readOrg}}

Suppose you have the following Org file:

\begin{Verbatim}[frame=single]
#+TITLE: My table file

There is text.

#+name: table1
| A | B | C |
|---+---+---|
| 1 | 2 | 3 |
| 4 | 5 | 6 |

And more text.

#+name: table2
| D | E | F |
|---+---+---|
| 1 | 2 | 3 |
| 4 | 5 | X |

And more text.

#+name: table3
| G | H | I |
|---+---+---|
| 5 | 7 | 9 |
| 6 | 8 | 0 |

And more text.

\end{Verbatim}

<<echo=false,results=hide>>=
file <-
"
#+TITLE: My table file

There is text.

#+name: table1
| A | B | C |
|---+---+---|
| 1 | 2 | 3 |
| 4 | 5 | 6 |

And more text.

#+name: table2
| D | E | F |
|---+---+---|
| 1 | 2 | 3 |
| 4 | 5 | X |

And more text.

#+name: table3
| G | H | I |
|---+---+---|
| 5 | 7 | 9 |
| 6 | 8 | 0 |

And more text.

"

writeLines(file, filename <- tempfile())
@
\noindent To read the second table, say, use \texttt{readOrg} and specify the
\texttt{table.name} argument.

<<>>=
readOrg(filename, table.name = "table2")
@
\appendix
<<results=tex>>=
toLatex(sessionInfo())
@
\end{document}